Control Panel


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LOD Plot: This visualization displays the calculated Logorithm-of-Odds score for this QTL across the entire chromosome.
Allele Effect Plot: This visualization displays the calculated Founder Strain allele effects for this QTL across the entire chromosome.
• The QTL's genetic locus is indicated at the largest LOD score.


Gene Plot: This visualization displays all MGI mouse genes within a ±1.5 megabase pair window of this selected QTL's apex LOD score.
• Genes which contain a SNP are highlighted in orange.
• Genes which contain a SNP that we consider of particular interest are highlighted in red.
• Pan/zoom functionality is possible using the mouse wheel and click/dragging.